Projects

The links to software and tools and their publishers has been made private, but you can still download free software from Solid Software Tools‘ website.

Latest Software:

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Full name
Account name (lowercase) Description
SOLiD™ System SRF Conversion Tool srf Applied Biosystems SOLiD™ System Sequence Read Format Conversion Tool
SOLiD™ System Small RNA Analysis Tool rna2map Applied Biosystems SOLiD™ System Human Small RNA Analysis Pipeline Tool
SOLiD™ System Human Small RNA Data srna Applied Biosystems SOLiD™ System Human Small RNA Data Set
SOLiD™ System GFF Conversion Tool matogff Applied Biosystems SOLiD™ System General Feature Format Conversion Tool
SOLiD™ System E. Coli DH10B Fragment dh10bfrag Applied Biosystems SOLiD™ System E.Coli DH10B Fragment Data
SOLiD™ System E. Coli DH10B 2X50 Data ecoli2x50 This data set was sequenced using the SOLiD™ System. It consists of a sequence run from a 2X50 mate-pair library. (and represents 293 panels of data or 1/8 of a slide totaling 58 million reads. It is approximately a 200X coverage of the E. Coli DH10B genome.)
SOLiD™ System de Novo Accessory Tools denovo SOLiD™ System de Novo Accessory Tools
SOLiD™ System Color Space Mapping Tool mapreads Applied Biosystems SOLiD™ System Color Space Alignment Tool
SOLiD™ System Analysis Pipeline Tool corona Applied Biosystems SOLiD™ System Whole Genome Analysis Pipeline Tool
SOLiD™ System Alignment Browser sab Applied Biosystems SOLiD™ System SOLiD™ Alignment Browser
SOCS socs Color space alignment tool
SHRiMP — SHort Read Mapping Package shrimp SHRiMP is a tool for mapping short read data in color-space or letter-space
Instructions of Account Use account Instructions of Account Use
Galaxy galaxy Galaxy is a web-based framework that integrates data sources and tools, making analysis simple and reproducible.
BFAST Blatlike Fast Accurate Search Tool bfast BFAST facilitates the fast and accurate mapping of short reads to reference sequences.
AB WT Analysis Pipeline transcriptome Applied Biosystems AB Whole Transcriptome Analysis Pipeline will allow you to map transcript reads to a reference genome, count both exon and gene tags, and export data in a format that can be viewed in the UCSC browser.
AB Small Indel Tool indel Applied Biosystems AB Small Indel Tool to identify small INDELs in data generated by the SOLID system
AB Inversion Tool inversion Applied Biosystems Inversion Tool to identify inversions in data generated by the SOLID system

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